Bottling Kombucha, Jun, Water Kefir & Milk Kefir Safely

2026 Guide to Avoid Geysers, Bottle Bombs & Sticky Kitchen Disasters

Who loves bubbles in their beverage? We do! In fact, when most people get into bottling Kombucha at home, they desire more fizz. Any why not? It’s fun, adds texture and flavor, looks cool in the glass and reminds many people of good times. How exciting when a new Booch is opened, bubbles rush madly upward, increasing exponentially, frothing to the top of the bottle and spilling forth gently!

 

There may even be a secret reason we crave those carbonated quaffs…could it be nutrition? Natural fizz, the kind found when bottling Kombucha, JUN and Kefir home brews, indicates the presence of living yeast, which contain B-vitamins that the body can use in bioavailable form.

 

Whatever the reason, no one loves scraping glass and fermented fruit off the ceiling, walls, and dog at 2am.

 

If you’re bottling Kombucha, Jun, water kefir or milk kefir, you’re working with a living drink. Yeast + sugar + warmth + a sealed bottle = carbonation. Get that balance right and you have gorgeous, lively fizz. Get it wrong and you can end up with geysers, overflow…or in rare cases, dangerous bottle bombs.

 

This guide walks you through:

 

  • why bottles explode in the first place
  • how to bottle safely in any season
  • how much sugar, yeast, and time your brews can handle
  • which bottles are safest
  • what to do if you already have a sketchy, over-pressurized bottle

Deep breath. You can absolutely have great fizz and a safe kitchen. Let’s go.

Why Fermented Drinks Explode: The Short Version

All naturally carbonated drinks work on the same equation:

 

Yeast + Sugar + Time + Warmth + Closed Bottle = CO₂ (bubbles & pressure)

Inside a sealed bottle, those bubbles have nowhere to go. If pressure builds faster than it can be absorbed into the liquid or held by the glass, it will find a weak point:

 

  • the cap
  • the seal
  • or, in the worst case, the glass itself

Common causes of bottle bombs & geysers

  • Using too much fruit or sugar when flavoring
  • Bottling when the drink is already very dry / fermented
  • High temperatures during second ferment
  • Using thin or low-quality glass (standard beer bottles, cheap swing-tops, etc.)
  • Allowing bottles to sit too long at room temp
  • Overfilling bottles with no headspace

Good news: all of these are 100% preventable once you know what to look for.

 Kombucha Mamma Says

 

You might be thinking, “What about plastic bottles? Problem solved!”

 

We say “PASS!”

 

While some people reuse soda or water bottles, they are made of material not designed for the acidity of any of our favorite fermented drinks. Even in one use they can absorb a plastic flavor. 

 

We’ve never felt comfortable with the risk or the taste when bottling Kombucha. But if it makes any homebrewer feel more at ease, then by all means use them.

Golden Safety Rules for Bottling Fermented Drinks

Before we zoom into the details, here are the non-negotiables:

 

  • Use strong, pressure-rated glass (swing-top or high-quality re-used commercial Kombucha bottles).
  • Leave headspace – about 1–2 inches at the top of the bottle.
  • Go easy on sugar & fruit (especially purees).
  • Don’t let second ferment sit in hot spots (direct sun, on/next to an oven, etc.).
  • Check bottles daily in warm weather. If they’re hissing or caps are bulging, act.
  • When in doubt: refrigerate. Cold slows the yeast and reduces pressure.
  • Contain the risk – store bottles in a box, cooler, or cabinet so any mess is contained.

Once these are in place, your risk of explosions plummets.

A Safe Bottling Routine (Kombucha, Jun, Water Kefir, Milk Kefir)

Step 1 – Start with a Healthy, Balanced First Ferment

  • Kombucha / Jun: taste should be tangy with some sweetness left; not jet-fuel vinegar.
  • Water kefir: lightly tangy, still a little sweet.
  • Milk kefir: pleasantly tart, not separated into curds/whey soup.

Over-fermented base + extra sugar in the bottle = rocket fuel.

Step 2 – Choose the Right Bottles

Best choices:

 

  • Rounded swing-top bottles (pressure-rated, thick glass)
  • Sturdy glass bottles with tight plastic caps
  • Reused commercial Kombucha bottles with solid lids

Pass or use with caution:

 

  • Thin beer bottles (higher shatter risk)
  • Very cheap or decorative swing-tops
  • Plastic water/soda bottles (not great with acidity, can absorb flavors)
  • Stainless bottles (don’t seal well enough for controlled carbonation)

Step 3 – Control Your Flavoring

Sugar is yeast’s party fuel.

 

  • Use small amounts of fruit: keep it to about 5–10% of the bottle volume.
  • Whole fruit or chunks are safer than puree or juice, which ferments faster.
  • Ginger, turmeric, and other rhizomes can create a lot of fizz – use modestly.
  • Syrups and honey (for kefir) are also sugar bombs—measure, don’t “glug.”

Safer alternative: flavor in the brewing vessel for 1–3 days after removing the culture & starter, then strain and bottle the flavored liquid. Much less mess, same great taste.

Step 4 – Mind the Yeast Load

Yeast is good. Too much yeast + too much sugar = trouble.

 

  • Avoid pouring all the yeasty dregs from the bottom of the vessel into one bottle.
  • For Kombucha & Jun:
    • Continuous Brew: draw from the spigot without stirring, and leave sludge behind.
    • Batch Brew: pour gently and leave the last cup or two in the jar.
  • You can strain through a fine mesh or cheesecloth if things are very yeasty, then:
    • return a small amount of strained yeast to the batch for flavor + healthy fizz
    • use the rest for things like sourdough or pet treats

Aim for balanced: some “ooglies” = character. A solid plug of sludge = overkill.

Step 5 – Leave Headspace & Cap Tightly

  • Fill bottles up to the shoulder, leaving about 1–2 inches at the top.
  • Cap firmly so CO₂ can build carbonation instead of just leaking out.

Overfilling can cause:

 

  • liquid forced out as soon as you crack the lid
  • higher internal pressure with less gas volume to buffer it

Step 6 – Choose Your Second Ferment Spot Wisely

Second ferment (F2) is where carbonation really happens.

 

  • Ideal F2 temp: 65–75°F (18–24°C)
  • Warmer than that = yeast goes turbo mode
  • Too cold = weak fizz and sad bubbles

Pick:

 

  • a cool pantry
  • cabinet
  • wine fridge on a higher temp
  • basement shelf

Avoid:

 

  • window sills
  • next to the stove or oven
  • on top of the fridge (it’s surprisingly warm up there)

Step 7 – Check Your Bottles (Especially in Hot Weather)

In warm months, check once a day:

 

  • Gently tilt a test bottle. Does it look dense with bubbles?
  • Lightly crack the cap over the sink. Is there a big hiss and rush of gas?
  • Caps bulging or sticky residue at the top? That’s your warning siren.

If they’re very active:

 

  • Move them to a cooler location
  • Transfer to the fridge to slow things down

For very aggressive batches, you can carefully “burp” (see below), but we prefer to get ahead of it via time + temperature + bottle type rather than constant burping.

Step 5 – Leave Headspace & Cap Tightly

Step 6 – Choose Your Second Ferment Spot Wisely

The Big 6 Safety Levers (How to Prevent Geysers & Explosions)

1. Reduce Flavoring Sugar

  • Keep sugars and fruits modest, especially:
    • pureed fruit
    • juice concentrates
    • sweet syrups
  • Consider:
    • Flavoring in the vessel for 2–3 days

Or adding purees at serving instead of into the bottle

2. Reduce Excess Yeast

  • Leave the most yeasty bottom layer behind.
  • Or strain your brew, then add back a little sediment for flavor and fizz.
  • Don’t sacrifice all yeast—just the sludge mountain.

Bonus: use saved yeast for sourdough starter or experiments.

3. Don’t Second Ferment Forever

It’s tempting to leave bottles on the counter “just one more day” for more fizz…then another…and another.

 

  • Kombucha/Jun: start with 2–5 days at room temp for F2.
  • Water kefir: 1–3 days is often plenty (it’s fast).
  • Milk kefir: generally gentler fizz; use 1–2 days if chasing bubbles.

If you want more fizz after that, age them cold instead of pushing them at room temp.

4. Use Cooler Second-Ferment Temperatures When It’s Hot

If your house is 80–90°F (27–32°C) inside:

 

  • Shorten F2 time
  • Use the coolest room in the house
  • Consider a wine fridge, cellar, or insulated cooler (no ice) as a buffer

Cooler second-ferment temps = slower pressure build + more control.

5. Use High-Quality Bottles (Rounded Wins)

Think like champagne, not cheap beer.

 

Best:

 

  • Thick swing-top bottles, especially rounded rather than square
  • Reused commercial Kombucha bottles
  • Sturdy glass with good, pressure-rated caps

Why rounded?

 

Pressure distributes more evenly in curved glass than in corners. Square bottles are more prone to stress points.

6. Contain the Mess (Just in Case)

You can’t control every variable — this is a living beverage, after all.

 

  • Store F2 bottles in:
    • a box
    • a plastic tub
    • a cooler with no ice
    • a closed cabinet

If something does go bang, you’ve limited the damage to one contained area, not the entire kitchen.

Kombucha vs Jun vs Water Kefir vs Milk Kefir

Kombucha

  • Base: sweetened tea
  • Ferments a bit slower than water kefir
  • High acids + tannins = great structure
  • Can build very strong carbonation, especially with:
    • ginger
    • berries
    • tropical fruit purees

Kombucha is usually your medium-speed, medium-pressure bottling buddy.

Jun

  • Base: green tea + raw honey
  • Ferments at slightly cooler temps
  • Often carbonates faster than Kombucha
  • Honey has complex sugars that keep yeast busy and happy

Treat Jun like Kombucha’s more excitable cousin:

  • shorter F2 times
  • cooler storage
  • conservative flavoring

Water Kefir

  • Base: sugar-water with water kefir grains
  • Fastest fermenter of the group
  • Loves sugar and produces lots of gas quickly

Respect water kefir. For real.

  • Keep flavoring modest
  • Watch warm weather extra carefully
  • Consider shorter F2 and more fridge time

If any drink will surprise you with sudden “champagne showers,” it’s often water kefir.

Milk Kefir

  • Base: milk
  • Produces some natural fizz, but generally gentler
  • Bottles can swell or pop if:
    • left warm too long
    • heavily sweetened
    • mixed with fruit and left in heat

Milk kefir has its own quirks (separation, pressure in the whey), but it tends to be the least explosive of the four—still worth treating with respect.

“Oh No, I Think I Have a Bottle Bomb!” What to Do

It happens. Here’s how to handle it safely:

 

  1. Do not shake the bottle.
  2. Put on eye protection and, ideally, long sleeves and gloves.
  3. Place the bottle in:
    1. a box or cooler
    2. the sink with a towel over it
  4. Chill it in the fridge for several hours to slow the yeast.
  5. When ready, carefully:
    1. cover the top with a towel
    2. crack the cap slowly to vent a bit of gas
    3. re-cap and repeat until pressure is manageable

If you really don’t feel safe:

 

  • Place the bottle inside a thick bag or box and dispose of it. Your safety is more important than saving 16 ounces of booch.

If one bottle has exploded or is clearly over-pressurized, treat the whole batch with caution — they’ve all experienced similar conditions.

Quick FAQs About Bottling & Safety

How much fruit can I add without risking a bottle bomb?

Aim for about 5–10% of the bottle volume. Less for purees and juices, which ferment faster.

Do I have to “burp” my bottles?

Not always. We prefer to manage carbonation through time, temperature, bottle choice, and sugar control first. Burping is a last resort for very active batches.

My bottle overflowed when I opened it—does that mean it was unsafe?

Not necessarily, but it was over-carbonated. Next time, use less sugar in F2, shorten the warm-time, or store cooler.

Can I use beer bottles for Kombucha or kefir?

We don’t recommend standard thin beer bottles. They were not designed for naturally carbonated ferments with variable pressure and are more prone to breaking.

Is it okay to use plastic bottles?

They’re less likely to shatter, but not ideal for long-term use with acidic drinks like Kombucha, Jun, and kefir. If you use them occasionally, avoid heat and don’t reuse endlessly.

Final Thoughts: Fizz, Not Fear

Bottling Your Fermented Drinks

Bottling your Kombucha, Jun, water kefir, and milk kefir should feel fun, not scary.

Once you understand:

  • how sugar, yeast, and temperature interact
  • how to choose the right bottles
  • how to control second-ferment time and storage

…you can confidently create beautifully bubbly drinks without turning your kitchen into a fermentation war zone.

You’re not just bottling a beverage.

All search results